Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs4919752 | chr12:53359229 | G/C | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs4919754 | chr12:53359396 | T/G | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs4919755 | chr12:53359416 | C/T | 4.59E-5 | 101 | 16.58 | 12.68 | 13 | KM Plot |
| SKCM | rs4957053 | chr5:575927 | T/C | 0 | 99 | 15.02 | 13.4 | 6.33 | KM Plot |
| SKCM | rs4957056 | chr5:570105 | T/C | 0 | 100 | 15.13 | 13.35 | 6.33 | KM Plot |
| SKCM | rs506873 | chr11:65767215 | A/C | 1.82E-5 | 101 | 15.57 | 14.9 | 9.7 | KM Plot |
| SKCM | rs523200 | chr11:64532579 | C/A | 5.48E-7 | 101 | 8.8 | 15.63 | 14.8 | KM Plot |
| SKCM | rs523752 | chr11:64548584 | A/G | 6.56E-7 | 100 | 14.85 | 15.63 | 8.8 | KM Plot |
| SKCM | rs55929359 | chr5:595956 | C/G | 0 | 98 | 15.02 | 12 | 6.33 | KM Plot |
| SKCM | rs55939594 | chr12:63427116 | T/C | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs55955015 | chr5:575182 | A/G | 0 | 99 | 15.02 | 13.4 | 6.33 | KM Plot |
| SKCM | rs55966529 | chr12:63384114 | A/C | 2.4E-7 | 100 | 15.13 | 14.3 | 8.8 | KM Plot |
| SKCM | rs56055826 | chr4:119789424 | T/A | 0 | 100 | 14.8 | 14.43 | 6.33 | KM Plot |
| SKCM | rs56216231 | chr5:581193 | G/A | 0 | 100 | 15.02 | 14.8 | 6.33 | KM Plot |
| SKCM | rs56278696 | chr5:582669 | A/G | 0 | 100 | 15.02 | 14.8 | 6.33 | KM Plot |